I had a lot of the same concerns being mostly organic with my grows in the past, and guess what I found out? UK Water Co's (and lots of others) don't use chlorine any more, but chloramine. This isn't (*allegedly*) as harmful as chlorine and last longer in the water without evaporating away.
Now you'd think that may be a bad thing as its still in the water, but I also found out that it is neutralized by humic acid. A good organic medium should have plenty of humics in there anyway, and even more importantly it only takes a few g of humic acid to neutralise thousands of gallons of chloraminated water. The Humics in the soil (and usually in any follow up organic feeds) can cope fine with the amount of chloramine in the water so it turns out that this is a bit of a red-herring re:killing off the microbes in the soil as it gets neutralized too quick to make much difference. There will be a slight loss of the 'herd' as they say but its not fukushima stylee
If that's the case then, maybe, there's also a wider environmental benefit to be had from using chlormaines instead of chlorine?