The way the autopot system works is by leaching the salts to the surface +-2cm of soil which at the end of a grow can look white with salt and have a caked soil feel. On the plus this means that you do not need to flush your soil to wash excess salts out the soil but on the down if you do decide to flush the soil you will need to use a large quantity of water or all you are doing is washing the salt cake on top to the roots :/
I may be a bit biased here but I love this system and have grown organically in this system as well : )
ive just set up a flood and drain with fabics and coco and im my research before hand i came across the upper build up in a few posts , they general option was clay balls/perlite type media would be better as it dont hold ferts , i get over it by tipping a few litres of the tanks feed from up top before each res change to flush the ferts down as i can only flood up to half way up the pots , , i have bottom fed coco in the past and had great success but i always have to option of a flush from the top can you do that with autopots? i guess you can lift them out should you want to flush ?
also coco works much better when top fed in that it drags oxygen down with it as it drains sth that wont happen to bottom feeding as well